Biosource

A collection of services for biology, medicine, and chemistry.

/Jobs

/jobs Dashboard showing long running jobs on Biosource

Sysrev

Services use to run sysrev.us

Routes

post /sysrev/modelService/v2

• postData: {project_id:Long,feature:String,documents:[{text:String,tag:Boolean}]}
• result: "model made for project_id"
• description: creates a model for predicting inclusion/exclusion for the given project.

post /sysrev/predictionService

• postData: {project_id:Long,feature:String,documents:[String]}
• result: {project_id:Long,feature:String,articles:[{prediction:Boolean,probability:Double}] result returned in same order as request.
• description:
  Loads the most recently created model (from /sysrev/modelService) for given project. Uses loaded model to predict inclusion/exclusion for the given articles.

get /sysrev/importance

• param: {pmids:[Long]}
• response:

    {
    geneCounts : [{symbol:String,chromosome:String,description:String,count:Long}],
    meshCounts : [{term:String,count:Long}],
    chemicalCounts : [{term:String,count:Long}]
    }

get /sysrev/copublication

• postdata: {pmids:[Long]}
• response: [{uri_a:String,uri_b:String,count:Long}]

Ontology

Natural Language Processing as a service for search and data extraction.

Routes

get /SemanticSubstances?query={String}:
Returns a list of compounds semantically similar to query. Learn more at /ontology

post /ontology/createOntology:

• postData: {ontology:String,synonyms:[{title:String,names:[String]}]}
ontology is a name and is composed of synonym lists where title is the preferred name and names are alternate names.
  A valid request is {ontology:"ice cream",synonyms:[{title:"vanilla",names:["white"],title:"chocolate",names:["brown"]}]
• description: creates a new ontology. Ontologies can be used to power custom search solutions.

get /ontology/search?query=String

• INCOMPLETE
• description: used to query an a pre-generated ontology (see /ontology/createOntology).